TargetAlignmentStruct Class Reference

Public Member Functions
	TargetAlignmentStruct ()
	~TargetAlignmentStruct ()
	TargetAlignmentStruct (const TargetAlignmentStruct &rhs)
	TargetAlignmentStruct (const AlignmentStruct &rhs)
void	SetAlign (TargetStruct *target_1_in, int *target_1_align_in, TargetStruct *target_2_in, int *target_2_align_in)
void	SetAlign (TargetStruct *target_1_in, int target_1_offset, TargetStruct *target_2_in, int target_2_offset, int len)
char	SetAlign (const char *target1, const char *target2)
void	SetAlign (int *target_1, int *target_2, int len_both)
void	SetAlign (int *target_1, int len_1, int *target_2, int len_2)
char	LoadFast (char *fast_file)
	read in a file that was created by the Fast protein structure alignment program
void	ClearAlign (void)
	Set it so that target_1 and target_2 are completely un-aligned (doesn't free data structures).
void	ModAlign (int target_1_offset, int target_2_offset, int len)
	Add an alignment fragment.
char	MergeAlign (TargetAlignmentStruct *align_1, TargetAlignmentStruct *align_2)
char	CheckAlign (void)
	Check to make sure the alignment make sence in terms of it's order (no rearranging, just gaps and insertions) true is bad alignment.
pValType	GetCaRmsd (TargetStruct *target_1, TargetStruct *target_2)
pValType	Get1to2Trans (TargetStruct *target_1, TargetStruct *target_2, vec3 trans1, mat3 rot, vec3 trans2)
pValType	Get2to1Trans (TargetStruct *target_1, TargetStruct *target_2, vec3 trans1, mat3 rot, vec3 trans2)
void	Move1to2 (TargetStruct *target_1, TargetStruct *target_2)
void	Move2to1 (TargetStruct *target_1, TargetStruct *target_2)
void	Move1to2 (vec3 *target_1, vec3 *target_2)
pValType	AlignTargetCa (TargetStruct *target_1, TargetStruct *target_2, int *target_1_align, int *target_2_align, vec3 trans1, mat3 rot, vec3 trans2)
pValType	AlignVec3 (vec3 *target_1, vec3 *target_2, vec3 trans1, mat3 rot, vec3 trans2)
void	ApplyAlignTrans (TargetStruct *target, vec3 trans1, mat3 rot, vec3 trans2)
void	ApplyAlignTrans (ResidueAtoms *target, int target_len, vec3 trans1, mat3 rot, vec3 trans2)
void	ApplyAlignTrans (vec3 *target, int target_len, vec3 trans1, mat3 rot, vec3 trans2)
int	GetTarget1Align (int i)
int	GetTarget2Align (int i)

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Detailed Description

Definition at line 949 of file open_prospect.h.

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The documentation for this class was generated from the following files:

• src/common/open_prospect.h
• src/common/align_atom.cc

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