ProspectParam Class Reference

The ProspectParam Object is designed to be a common loading place for tabled data that has been stored in parameter files installed with the open_prospect installation (typically in $PREFIX/share/open_prospect). More...

#include <open_prospect.h>

Public Member Functions
	ProspectParam (char *base_path=NULL)
	~ProspectParam ()
int	Init (void)
int	InitRotamer (void)
	Initilized Rotamer array library.
int	InitPops (void)
PopsParam *	GetPopsParam (void)
PopsParam *	GetPopsRParam (void)
char **	Template_Paths (void)
	Find the different directories that have been listed as holding templates.
char *	TemplateFind (char *template_name)
	Find a template among the different template directories.
threading_function	ThreaderFind (char *request_name)
	This function finds the function pointer for the requested threader.
int	Weight_Find (char *request_name, WeightArray weights)
int	DoThreading (char *threader_name, WeightArray weight, TemplateStruct *template_data, TargetStruct *target_data, AlignmentStruct *alignment, struct ScoreStruct *scores)
	This function initilized the structure data used for rotamer prediction.
int	DoThreading (threading_function threader, WeightArray weight, TemplateStruct *template_data, TargetStruct *target_data, AlignmentStruct *alignment, struct ScoreStruct *scores)
void	CopyGonnetMatrix (class TemplateStruct *template_data)
Data Fields
char *	ProspectPath
char **	template_paths
pValType **	PAIR_POT
pValType	SINGLETON [21][9]
char	ALIGN_MATRIX [21][21]
pValType	GONNET_MATRIX [21][21]
pValType	CONTACT_MATRIX [21][MaxContactCount]
DfireStruct	dfire
ResidueInfoElement *	residue_info
RotamerArray *	rotamer_array
AtomData *	atom_data
int	atom_data_count
PopsParam *	pops_param
PopsParam *	pops_r_param
char	output_weights
char	output_timeinfo
char	output_template_loc
char	output_pdb
char	output_backbone
char	simple_twobody
unsigned char	ncpus
long	max_bytes
int	z_cycles
char	filter
char	no_loop
char	second_guess
char	full_twobody
char	v_level

---

Detailed Description

The ProspectParam Object is designed to be a common loading place for tabled data that has been stored in parameter files installed with the open_prospect installation (typically in $PREFIX/share/open_prospect).

Definition at line 454 of file open_prospect.h.

---

Member Function Documentation

char ** ProspectParam::Template_Paths (  void   )

Find the different directories that have been listed as holding templates. Parameters: none  Definition at line 248 of file prospect_param.cc. References ProspectPath.

char * ProspectParam::TemplateFind (  char *  template_name  )

Find a template among the different template directories. Parameters: template_name  Definition at line 225 of file prospect_param.cc. References template_paths.

threading_function ProspectParam::ThreaderFind (  char *  request_name  )

This function finds the function pointer for the requested threader. Parameters: request_name  Definition at line 65 of file prospect_param.cc. Referenced by DoThreading().

---

The documentation for this class was generated from the following files:

• src/common/open_prospect.h
• src/common/prospect_param.cc

---