Inheritance diagram for DynamicAlign:
Public Member Functions | |
| DynamicAlign () | |
| DynamicAlign (int in_x, int in_y) | |
| virtual | ~DynamicAlign () |
| void | FreeMem (void) |
| void | SetDim (int x, int y) |
| void | Align (void) |
| virtual void | Align (int start_x, int start_y, int end_x, int end_y, char start_state=vMatch, pValType start_val=0.0) |
| void | TraceAlign (int *align_x, int *align_y) |
| void | TraceAlign (int start_x, int start_y, int end_x, int end_y, int *align_x, int *align_y) |
| void | TraceAlign (AlignmentStruct *out_align) |
| pValType | GetCellVal (int x, int y) |
| char | GetCellState (int x, int y) |
| pValType | GetCellEnergy (int x, int y) |
| void | SetCellState (int x, int y, int state) |
| void | ContinueAlign (int start_x, int start_y) |
| void | ForceXDelete (int start_x, int len) |
| void | ForceYDelete (int start_y, int len) |
| void | ForceAlign (int start_x, int start_y, int len) |
Protected Attributes | |
| int | size_x |
| int | size_y |
| pValType ** | energy_matrix |
| pValType ** | score_matrix |
| pValType | gap_open |
| pValType | gap_extend |
| char ** | source_matrix |
Definition at line 1352 of file open_prospect.h.
1.4.6